get.ucsc.tabledef

either <code>"gene"</code> or <code>"exon"</code>.

type

one of <code>"ucsc"</code> or <code>"refseq"</code> 
    to use the UCSC or RefSeq annotation sources 
    respectively.

refdb

either <code>"queries"</code> for SQLite table definitions
    or <code>"fields"</code> for only a vector of table field names.

what

Creates a list of UCSC Genome Browser database tables and 
    their SQLite definitions with the purpose of creating a 
    temporary SQLite database to be used used with metaseqR. 
    This functionality is used when the package RMySQL is not 
    available for some reason, e.g. Windows machines.

Provides an interface to several normalization and
    statistical testing packages for RNA-Seq gene expression data.
    Additionally, it creates several diagnostic plots, performs
    meta-analysis by combinining the results of several statistical
    tests and reports the results in an interactive way.

get.ucsc.tabledef: Get SQLite UCSC table defintions, according to organism and source

Description

Usage

Arguments

Value

Examples