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metaseqR (version 1.12.2)

get.ucsc.tbl.tpl: Create SQLite UCSC table template defintions

Description

Returns an SQLIte table template defintion, according to UCSC Genome Browser database table schemas. This functionality is used when the package RMySQL is not available for some reason, e.g. Windows machines. Internal use only.

Usage

get.ucsc.tbl.tpl(tab, what="queries")

Arguments

tab
name of UCSC database table.
what
"queries" for SQLite table definitions or "fields" for table column names.

Value

  • An SQLite table definition.

Examples

Run this code
db.table.tmpl <- get.ucsc.tbl.tpl("knownCanonical")

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