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metaseqR (version 1.12.2)

load.bs.genome: Loads (or downloads) the required BSGenome package

Description

Retrieves the required BSgenome package when the annotation source is "ucsc" or "refseq". These packages are required in order to estimate the GC-content of the retrieved genes from UCSC or RefSeq.

Usage

load.bs.genome(org)

Arguments

org
one of metaseqr supported organisms.

Value

  • A proper BSgenome package name.

Examples

Run this code
bs.obj <- load.bs.genome("mm9")

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