estimateCMR.methylation


A MethyGenoSet object keeps the DNA methylation data


methyGenoSet


The function used to estimate the methylation levels within the chromosome region


estimateFun


Pre-calculated probe annotation (a GRanges object)


probeAnnotation


Gene elements used to calculate the transcript promoter methylation levels if cmr GRanges object is not provided.


selectGeneElement


Number of cores used to calculate in parallel


mc.cores


Estimate the averaged methylation levels within a chromosome region defined as a GRanges object or transcript promoter <p></p><p></p>

methods

The methyAnalysis package aims for the DNA methylation data
analysis and visualization. A MethyGenoSet class is defined to keep the
chromosome location information together with the data. The package also includes
functions of estimating the methylation levels from Methy-Seq data.

Pan Du

methyAnalysis

DNA methylation data analysis and visualization

estimateCMR.methylation function

A MethyGenoSet object keeps the DNA methylation data

The function used to estimate the methylation levels within the chromosome region

Pre-calculated probe annotation (a GRanges object)

Gene elements used to calculate the transcript promoter methylation levels if cmr GRanges object is not provided.

Number of cores used to calculate in parallel

Estimate the averaged methylation levels within a chromosome region defined as a GRanges object or transcript promoter

estimateCMR.methylation: Estimate the averaged methylation levels within a chromosome region or transcript promoter

Description

Usage

Arguments

Value

Details

Examples