getCoverage


  GRanges object specify the genome locations to get coverage


grange


  the genome coverage (a RleList object) output by NGS pipeline


coverage


  whether to calculate the coverage based on the start location or the average of the entire GRanges element


startOnly


  whether return a GRanges object or a vector of coverage


as.GRanges


calculate the average coverage on each element of a given GRanges object


methods

The methyAnalysis package aims for the DNA methylation data
analysis and visualization. A MethyGenoSet class is defined to keep the
chromosome location information together with the data. The package also includes
functions of estimating the methylation levels from Methy-Seq data.

Pan Du

methyAnalysis

DNA methylation data analysis and visualization

getCoverage function

GRanges object specify the genome locations to get coverage

the genome coverage (a RleList object) output by NGS pipeline

whether to calculate the coverage based on the start location or the average of the entire GRanges element

whether return a GRanges object or a vector of coverage

calculate the average coverage on each element of a given GRanges object

getCoverage: get the coverage based on a given GRanges object

Description

Usage

Arguments

Value