methylKit (version 0.9.5)

percMethylation: get percent methylation scores from methylBase object

Description

get percent methylation scores from methylBase object

Usage

percMethylation(methylBase.obj, rowids = FALSE)

Arguments

methylBase.obj

a methylBase object

rowids

if TRUE, matrix rownames have identifiers as base/region location (default:FALSE)

Value

matrix with percent methylation values per base/region across all samples, row names would be base/region identifiers

Examples

# NOT RUN {
data(methylKit)
mat=percMethylation(methylBase.obj)
head(mat)
# }