methylData-class

diagnostics,methylData-method

methylated.N,methylData-method

methylated.N<-,methylData,matrix-method

plotNAs,methylData-method

pval.detect,methylData-method

pval.detect<-,methylData,numeric-method

unmethylated.N,methylData-method

unmethylated.N<-,methylData,matrix-method

A superclass (virtual) for MethyLumiSet and MethyLumiM.

classes

This package provides classes for holding and manipulating
	     Illumina methylation data.  Based on eSet, it can contain MIAME
	     information, sample information, feature information, and
	     multiple matrices of data.  An "intelligent" import function,
	     methylumiR can read the Illumina text files and create a
	     MethyLumiSet. methylumIDAT can directly read raw IDAT files from 
       HumanMethylation27 and HumanMethylation450 microarrays.  Normalization,
       background correction, and quality control features for GoldenGate,
       Infinium, and Infinium HD arrays are also included.

Sean Davis

methylumi

Handle Illumina methylation data

methylData-class function

A virtual Class: No objects may be created from it.

Objects from the Class

Class <code>"methylData"</code>, superclass for MethyLumiSet and MethyLumiM

methylData-class: Class `"methylData"`, superclass for MethyLumiSet and MethyLumiM

Description

Arguments

Objects from the Class

See Also

Examples