plotSampleIntensities

an object of class MethyLumi or a subclass

beta.cuts

The Illumina methylation platforms all show a significant dye bias.  The 
  plotSampleIntensities method shows the density plots for the two channels
  allowing direct visualization of the effect.

hplot

This package provides classes for holding and manipulating
	     Illumina methylation data.  Based on eSet, it can contain MIAME
	     information, sample information, feature information, and
	     multiple matrices of data.  An "intelligent" import function,
	     methylumiR can read the Illumina text files and create a
	     MethyLumiSet. methylumIDAT can directly read raw IDAT files from 
       HumanMethylation27 and HumanMethylation450 microarrays.  Normalization,
       background correction, and quality control features for GoldenGate,
       Infinium, and Infinium HD arrays are also included.

plotSampleIntensities: Plot the sample intensities.

Description

Usage

Arguments

Examples