metrix (version 1.1.0)

water_quality_analysis: Water quality analysis

Description

This function performs all the calculations available in metrix package.

Usage

water_quality_analysis(dataset, store = FALSE, dec_c = ".", verbose = FALSE)

Value

This function returns a list with the following components:

bioind_n

The numerical values of the biotic indexes.

bioind_c

The water quality class asign to each sample site according to the numerical value of the biotic index.

densimetrics

A data.frame with all the calculated density measures.

tolmetrics

A data.frame with all the calculated tolerance measures.

compmetrics

A data.frame with all the calculated composition measures.

trophmetrics

A data.frame with all the calculated trophic measures.

richmetrics

A data.frame with all the calculated richness measures.

Arguments

dataset

A data.frame obtained from read_data.

store

A logical value indicating if the user want to store the results in a file.

dec_c

A character used for decimal separator on results file.

verbose

A logical value indicating if progress messages should be given.

Author

Juan Manuel Cabrera and Julieta Capeletti.

See Also

read_data, biotic_ind, densi_metrics, icbrio_ind, tol_metrics, comp_metrics, troph_metrics, rich_metrics

Examples

#Load example data
example_data

#Run water_quality_analysis with that example_data
complete<-water_quality_analysis(example_data)

#Check results
complete$bioind_n
complete$bioind_c
complete$densimetrics
complete$tolmetrics
complete$compmetrics
complete$trophmetrics
complete$richmetrics