common-args

A set of arguments that are commonly reused across functions of
<code>{mgi.report.reader}</code>.

internal

Provides readers for easy and consistent importing of
Mouse Genome Informatics (MGI) report files:
<https://www.informatics.jax.org/downloads/reports/index.html>. These data
are provided by Baldarelli RM, Smith CL, Ringwald M, Richardson JE, Bult CJ,
Mouse Genome Informatics Group (2024) <doi:10.1093/genetics/iyae031>.

Ramiro Magno

mgi.report.reader

Read Mouse Genome Informatics Reports

David Shaw

Isabel Duarte

Ismail Gbadamosi

Ali Jawaid

Nencki Institute of Experimental Biology 

University of Algarve 

The Jackson Laboratory 

Pattern Institute 

common-args function

<dl><dt>marker_id</dt>
<dd>A character vector. MGI accession identifiers.</dd>
<dt>marker_symbol</dt>
<dd>A character vector. MGI marker symbols.</dd>
<dt>report_key</dt>
<dd>A character vector. A key used to uniquely refer to an MGI
report.</dd>
<dt>report_file</dt>
<dd>A character vector. The file path or URL to an MGI report
file.</dd>
<dt>report_type</dt>
<dd>A character vector. The type of an MGI report.</dd></dl>

Arguments

Common arguments — common-args

<dl>

<dt>marker_id</dt>
<dd>A character vector. MGI accession identifiers.</dd>


<dt>marker_symbol</dt>
<dd>A character vector. MGI marker symbols.</dd>


<dt>report_key</dt>
<dd>A character vector. A key used to uniquely refer to an MGI
report.</dd>


<dt>report_file</dt>
<dd>A character vector. The file path or URL to an MGI report
file.</dd>


<dt>report_type</dt>
<dd>A character vector. The type of an MGI report.</dd>

</dl>

Common arguments

common-args: Common arguments

Description

Arguments