mglmn (version 0.1.0)

mamglm: Model averaging for multivariate generalized linear models

Description

Model averaging for multivariate GLM based on information theory.

Usage

mamglm(data, y, family, scale = TRUE, AIC.restricted = FALSE)

Arguments

data

Data frame, typically of environmental variables. Rows for sites and colmuns for environmental variables.

y

Name of 'mvabund' object (character)

family

the 'family' object used.

scale

Whether to scale independent variables (default = TRUE)

AIC.restricted

Whether to use AICc (TRUE) or AIC (FALSE) (default = TRUE).

Value

A list of results

res.table

data frame with "AIC", AIC of the model, "log.L", log-likelihood of the model, "delta.aic", AIC difference to the best model, "wAIC", weighted AIC to the model, "n.vars", number of variables in the model, and each term.

importance

vector of relative importance value of each term, caluclated as as um of the weighted AIC over all of the model in whith the term aperars.

family

the 'family' object used.

References

Burnham, K.P. & Anderson, D.R. (2002) Model selection and multi-model inference: a practical information-theoretic approach. Springer Verlag, New York.

Wang, Y., Naumann, U., Wright, S.T. & Warton, D.I. (2012) mvabund- an R package for model-based analysis of multivariate abundance data. Methods in Ecology and Evolution, 3, 471-474.

Warton, D.I., Wright, S.T. & Wang, Y. (2012) Distance-based multivariate analyses confound location and dispersion effects. Methods in Ecology and Evolution, 3, 89-101.

Nakamura, A., C. J. Burwell, C. L. Lambkin, M. Katabuchi, A. McDougall, R. J. Raven, and V. J. Neldner. (2015) The role of human disturbance in island biogeography of arthropods and plants: an information theoretic approach. Journal of Biogeography 42:1406-1417.

See Also

maglm, ses.maglm, ses.mamglm

Examples

# NOT RUN {
#load species composition and environmental data
library(mvabund)
data(capcay)
#use a subset of data in this example to reduce run time
env_assem <- capcay$env_assem[, 1:5]
freq.abs <- mvabund(log(capcay$abund + 1))

#to fit a gaussian regression model to frequency data:
mamglm(data = env_assem, y = "freq.abs", family = "gaussian")

#to fit a binomial regression model to presence/absence data"
pre.abs0 <- capcay$abund
pre.abs0[pre.abs0 > 0] = 1
pre.abs <- mvabund(pre.abs0)

mamglm(data = env_assem, y = "pre.abs", family = "binomial")
# }