compare_algorithms

Compares results of 3 objects obtained from running nls

Microbial growth is often measured by growth curves i.e. a table of population sizes and times of measurements.
This package allows to use such growth curve data to determine the duration of "microbial lag phase" i.e. the time needed for microbes to restart divisions.
It implements the most commonly used methods to calculate the lag duration, these methods are discussed and described in Opalek et.al. 2022.
Citation: Smug, B. J., Opalek, M., Necki, M., & Wloch-Salamon, D. (2024). Microbial lag calculator: A shiny-based application and an R package for calculating the duration of microbial lag phase. Methods in Ecology and Evolution, 15, 301–307 <doi:10.1111/2041-210X.14269>.

Bogna Smug 

miLAG

Calculates Microbial Lag Duration (on the Population Level) from
Provided Growth Curve Data

Bogna Smug

compare_algorithms function

<dl><dt>nls_LM_no_bound</dt>
<dd>first object resulting from running nls</dd>
<dt>nls_PORT</dt>
<dd>second object resulting from running nls</dd>
<dt>nlsres_LM</dt>
<dd>third object resulting from running nls</dd></dl>

Arguments

compare_algorithms — compare_algorithms

<dl>

<dt>nls_LM_no_bound</dt>
<dd>first object resulting from running nls</dd>


<dt>nls_PORT</dt>
<dd>second object resulting from running nls</dd>


<dt>nlsres_LM</dt>
<dd>third object resulting from running nls</dd>

</dl>

compare_algorithms: compare_algorithms

Description

Usage

Value

Arguments