make_grwoth_curve_df

Create a growth curve data frame that can be later passed to the lag clculation functions

Microbial growth is often measured by growth curves i.e. a table of population sizes and times of measurements.
This package allows to use such growth curve data to determine the duration of "microbial lag phase" i.e. the time needed for microbes to restart divisions.
It implements the most commonly used methods to calculate the lag duration, these methods are discussed and described in Opalek et.al. 2022.
Citation: Smug, B. J., Opalek, M., Necki, M., & Wloch-Salamon, D. (2024). Microbial lag calculator: A shiny-based application and an R package for calculating the duration of microbial lag phase. Methods in Ecology and Evolution, 15, 301–307 <doi:10.1111/2041-210X.14269>.

Bogna Smug 

miLAG

Calculates Microbial Lag Duration (on the Population Level) from
Provided Growth Curve Data

Bogna Smug

make_grwoth_curve_df function

<dl><dt>time</dt>
<dd>numeric vector of times when biomass was measured (chronologically ordered as in growth curve)</dd>
<dt>biomass</dt>
<dd>numeric vector of measured biomass values (chronologically ordered as in growth curve)</dd>
<dt>curve_id</dt>
<dd>character vector of growth curve identifiers (i.e. if there are multiple measurements done at the same time point, they should have different curve_id)</dd></dl>

Arguments

make_grwoth_curve_df — make_grwoth_curve_df

<dl>

<dt>time</dt>
<dd>numeric vector of times when biomass was measured (chronologically ordered as in growth curve)</dd>


<dt>biomass</dt>
<dd>numeric vector of measured biomass values (chronologically ordered as in growth curve)</dd>


<dt>curve_id</dt>
<dd>character vector of growth curve identifiers (i.e. if there are multiple measurements done at the same time point, they should have different curve_id)</dd>

</dl>

make_grwoth_curve_df: make_grwoth_curve_df

Description

Usage

Value

Arguments