Functional enrichment analysis
Ensemble method for miRNA target prediction using Borda count election with topk targets
miRNA target prediction with the ProMISe method
miRNA target prediction with the Distance correlation method
Extract top k miRNA-mRNA interactions
Functional enrichment analysis
KEGG enrichment analysis for a gene list
miRNA target prediction with the Randomized Dependence Coefficient method
Read the header of the dataset
Read dataset from csv file
miRNA target prediction with the Elastic-net regression coefficient method
Extract topk predicted targets of a miRNA
Rank all the targets of a miRNA and extract the topk targets
Stardarsise the dataset
Stadardise the dataset to have mean=0 and std=1 in each column.
miRNA target prediction with the Z-score method
A dry lab for exploring miRNA-mRNA relationships
Validate the targets of a miRNA using transfection data
miRNA target prediction with mutual information method
Filter and compare the validation results from 12 methods
Keep the miRNAs that have at least noVal confirmed targets and compare the validation results from all methods.
Validate the targets of all miRNA using both experimentally confirmed and transfection data
Convert miRNA symbols from a miRBase version to another
miRNA target prediction with the Spearman correlation coefficient method
Differentially expressed analysis
Validate the targets of a miRNA
miRNA target prediction with the Hoeffding correlation coefficient method
Get data from TCGA
Function for validate the results from all 12 methods.
Ensemble method for miRNA target prediction using Borda count election
Filter, impute, and normalise data.
miRNA target prediction with the IDA method
miRNA target prediction with the Kendall correlation coefficient method
Read results from other methods
miRNA target prediction with the Lasso method
miRNA target prediction with the Pearson correlation coefficient method