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miRNApath (version 1.32.0)

miRNApath: Pathway Enrichment for miRNA Expression Data

Description

This package provides pathway enrichment techniques for miRNA expression data. Specifically, the set of methods handles the many-to-many relationship between miRNAs and the multiple genes they are predicted to target (and thus affect.) It also handles the gene-to-pathway relationships separately. Both steps are designed to preserve the additive effects of miRNAs on genes, many miRNAs affecting one gene, one miRNA affecting multiple genes, or many miRNAs affecting many genes.

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Version

Version

1.32.0

License

LGPL-2.1

Maintainer

James M Ward

Last Published

February 15th, 2017

Functions in miRNApath (1.32.0)

mirnaTable

Create miRNA Enrichment Summary Table as data.frame
miRNApath-package

miRNApath: Pathway Enrichment for miRNA Expression Data
mirnaobj

mirnaobj, an S4 object of class "mirnapath"
runEnrichment

Perform gene set enrichment analysis on a miRNApath object
mirnapath-class

S4 class mirnapath and its "show" method
checkColumns

Check data.frame for Required Columns
convertFoldChange

Converts Fold Change to Consistent Format
loadmirnapathways

Load gene to pathway associations for miRNApath
loadmirnatogene

Load miRNA to gene associations for miRNApath
loadmirnapath

Load miRNApath Data
filtermirnapath

Filter miRNApath data