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miRNAtap (version 1.6.0)

miRNAtap: microRNA Targets - Aggregated Predictions

Description

The package facilitates implementation of workflows requiring miRNA predictions, it allows to integrate ranked miRNA target predictions from multiple sources available online and aggregate them with various methods which improves quality of predictions above any of the single sources. Currently predictions are available for Homo sapiens, Mus musculus and Rattus norvegicus (the last one through homology translation).

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Version

Version

1.6.0

License

GPL-2

Maintainer

Maciej Pajak

Last Published

February 15th, 2017

Functions in miRNAtap (1.6.0)

getTargetsFromSource

Get target list from a single source
getPredictedTargets

Get aggregated ordered list of predicted targets for miRNA
translate

Homology transfer for miRNAtap
MirnaDb-class

Database class
aggregateRanks

Aggreagate ranks from multiple sources with various methods
miRNAtap

miRNAtap: microRNA Targets - Aggregated Predictions.