miRada (version 0.1.11-13)

OX40Luminex: A sample data of beads based microRNA microarray

Description

A sample data of Luminex beads based microRNA microarray.

Usage

data(OX40Luminex)

format

A data frame with 3640 rows and 8 columns (variables). lll{ Gene character MicroRNA names. Treat0 numeric measures under treatment with code '0' Treat1 numeric measures under treatment with code '1' Treat2 numeric measures under treatment with code '2' Treat3 numeric measures under treatment with code '3' Background numeric measures of background noises Sample numeric sample id. Pool numeric Pool id. }

An object lum of class luminx.

References

Wang, B., Zhang, S-G., Wang, X-F., Tan, M. and Xi, Y. (2012) "Testing for differentially-expressed microRNAs with errors-in-variables nonparametric regression", PLoS ONE 7(5): e37537. doi:10.1371/journal.pone.0037537.

Wang, B., Wang, X-F. and Xi, Y. (2011) "Normalizing bead-based microRNA expression data: a measurement error model-based approach", Bioinformatics, 27(11), 1506-1512.

Wang, B., Howell, P., Bruheim, S. Ju, J, Owen, L.B., Fodstad, O. and Xi, Y. (2011). "Systematic Evaluation of Three microRNA Profiling Platforms: Microarray, Beads Array, and Quantitative Real-Time PCR Array", PLoS ONE 6(2): e17167.

Wang, B. and Wertelecki, W. (2012) "Density Estimation for Data With Rounding Errors", Computational Statistics and Data Analysis, (in press). doi: 10.1016/j.csda.2012.02.016. link

Wang, B., Wang, X-F. and Xi, Y. (2011) "Normalizing bead-based microRNA expression data: a measurement error model-based approach", Bioinformatics, 27(11), 1506-1512.

Wang, X-F. and Wang, B. (2011) "Deconvolution Estimation in Measurement Error Models: The R Package decon", Journal of Statistical Software, 39(10), 1-24.

Examples

data(OX40Luminex)