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miRcomp (version 1.2.2)

Tools to assess and compare miRNA expression estimatation methods

Description

Based on a large miRNA dilution study, this package provides tools to read in the raw amplification data and use these data to assess the performance of methods that estimate expression from the amplification curves.

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Version

Version

1.2.2

License

GPL-3 | file LICENSE

Maintainer

Matthew N McCall

Last Published

February 15th, 2017

Functions in miRcomp (1.2.2)

accuracy

Assess the accuracy of the expression estimates
qualityAssessment

Quality Assessment for MicroRNA Expression Estimates
limitOfDetection

Assess the limit of detection of a given method
qpcRlinexp

The processed data generated using the linear-exponential method implemented in the qpcR software package.
precision

Assess the precision of the expression estimates
lifetech

The processed data generated using the LifeTech software.
qpcRb4

The processed data generated using the 4 parameter sigmoidal method from the qpcR software.
titrationResponse

Assess monotone signal across titration
qpcRb5

The processed data generated using the 5 parameter sigmodial method from the qpcR software.
qpcRdefault

The processed data generated using the default method (4 parameter log-logistic) implemented in the qpcR software package.
qpcRl5

The processed data generated using the 5 parameter log-logistic method from the qpcR software.
completeFeatures

Determine the Number of Completely Observed Features
expressionComp

Compare expression estimates between two methods