combineGrowthLimFuncDefault: combines the growth limitation functions and max growth rates to get the growth rate of strain

Description

Returns the specific growth rate in units of inverse time

Usage

combineGrowthLimFuncDefault(
  strainName,
  groupName,
  pathName,
  subst,
  ess,
  boost,
  bio.sub,
  maxGrowthRate,
  growthLim,
  keyResName,
  nonBoostFrac
)

Arguments

strainName

Name of the strain that is being looped through in the ODE solver

groupName

Name of microbial group that is being looped through in the ODE solver

pathName

Name of metabolic path (e.g. path1) that is being looped through in the ODE solver

subst

Vector of strings giving the names of the substitutable resources for given strain, pathway

ess

Vector of strings giving the names of the essential resources for given strain, pathway

boost

Vector of strings giving the names of the boosting resources for given strain, pathway

bio.sub

Vector of strings giving the names of the microbial resources for given strain, pathway

maxGrowthRate

Vector containing maximum growth rate on each resource (named by resourceNames). If a resource is not on the pathway the value is NA

growthLim

Vector containing the growth limitation from each resource (named by resourceNames). If a resource is not on the pathway the value is NA

keyResName

String giving the name of the key resource on this pathway

nonBoostFrac

(scalar) Fraction of max growth achievable if boosting resource is not present but is required on this pathway

Value

(scalar) specific growth rate in units of inverse time