makeParamMatrixG

Vector of strings which contains the names of the microbial groups in the system e.g. c('Bacteroides','Acetogens')

microbeNames

Name of parameter (Rtype and stoichiom)

parameterName

Named vector. Number of paths for each microbial group

numPaths

resData

Scalar. Molar mass of microbe e.g. 113g/mol

microbeMolarMass

Vector of strings which contains the names of the resources in the system

resNames

generic function which assigns values for Rtype or stoichiom
to an array of the same name
array has form [group,resource,path]
reads in data from MFG dataframes

internal

Modelling interacting microbial populations - example applications
include human gut microbiota, rumen microbiota and phytoplankton. Solves a
system of ordinary differential equations to simulate microbial growth and
resource uptake over time. This version contains network visualisation functions.

Helen Kettle

microPop

Process-Based Modelling of Microbial Populations

makeParamMatrixG function

generic function which assigns values for Rtype or stoichiom
to an array of the same name
array has form [group,resource,path]
reads in data from MFG dataframes — makeParamMatrixG

generic function which assigns values for Rtype or stoichiom
to an array of the same name
array has form [group,resource,path]
reads in data from MFG dataframes

makeParamMatrixG: generic function which assigns values for Rtype or stoichiom to an array of the same name array has form [group,resource,path] reads in data from MFG dataframes

Description

Usage

Arguments

Value