microPop (version 1.6)

quickPlot2: Generic plotting showing results of microPop Now shows resources and microbes on one plot.

Description

Generic plotting showing results of microPop Now shows resources and microbes on one plot.

Usage

quickPlot2(
  soln,
  numR,
  numStrains,
  microbeNames,
  yLabel = "Concentration (g/L)",
  xLabel = "Time",
  sumOverStrains = TRUE,
  resourceLegendPosition = "topleft",
  microbeLegendPosition = "topleft",
  saveFig = FALSE,
  figType = "eps",
  figName = "microPopFig",
  cex.plot = 1,
  cex.legend = 0.7
)

Arguments

soln

ODE output from microPopModel() i.e. matrix out$solution

numR

Scalar. Number of resources

numStrains

Scalar. Number of strains per group

microbeNames

Vector of strings which contains the names of the microbial groups in the system e.g. c('Bacteroides','Acetogens')

yLabel

String for y axis label. Default is "Concentration (g/L)"

xLabel

String for x axis label. Default is "Time"

sumOverStrains

Logical. Default=TRUE

resourceLegendPosition

String. Position of legend in resource plot, default is 'topleft'

microbeLegendPosition

String. Position of legend in microbe plot, default is 'topleft'

saveFig

Logical. Default is FALSE

figType

String. Default is "eps"

figName

String. Default is "microPopFig"

cex.plot

Multiplier for text size on axes text. Default is 1

cex.legend

Multiplier for text size in legend. Default is 0.7

Value

Nothing just generates a plot