sumFlowOverStrains

is list containing the production or uptake flows (the output from reshapeFlowMat())

flowList

is a vector containing the names of the microbial strains (strings)

allStrainNames

is a vector containing the names of the microbial groups (strings)

groupNames

make links and nodes matrices for use in network plotting software

Modelling interacting microbial populations - example applications
include human gut microbiota, rumen microbiota and phytoplankton. Solves a
system of ordinary differential equations to simulate microbial growth and
resource uptake over time. This version contains network visualisation functions.

sumFlowOverStrains: sumFlowOverStrains

Description

Usage

Arguments