data-physeq

physeq

<p>Published in PNAS in early 2011. This work compared the microbial
communities from 25 environmental samples and three known ``mock communities''
-- a total of 9 sample types -- at a depth averaging 3.1 million reads per sample.
Authors were able to reproduce diversity patterns seen in many other
published studies, while also invesitigating technical issues/bias by
applying the same techniques to simulated microbial communities of known</p>

data

Provides functions to enhance the available
statistical analysis procedures in R by providing simple functions to
analysis and visualize the 16S rRNA data.Here we present a tutorial
with minimum working examples to demonstrate usage and dependencies.

Kai Guo

microbial

Do 16s Data Analysis and Generate Figures

Pan Gao

data-physeq function

The physeq data was modified from the (Data) Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample (2011) — data-physeq

The physeq data was modified from the (Data) Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample (2011)

data-physeq: The physeq data was modified from the (Data) Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample (2011)

Description

Arguments

References

Examples