microbial (version 0.0.19)

prefilter: filter the phyloseq

Description

filter the phyloseq

Usage

prefilter(physeq, min = 10, perc = 0.05)

Arguments

physeq

A phyloseq object containing merged information of abundance, taxonomic assignment, sample data including the measured variables and categorical information of the samples, and / or phylogenetic tree if available.

min

Numeric, the threshold for mininal Phylum shown in samples

perc

Numeric, input the percentage of samples for which to filter low counts.

Value

filter phyloseq object

Examples

# NOT RUN {
data("Physeq")
physeqs<-prefilter(physeq)
# }