phy_tree

Retrieve phylogenetic tree (phylo-class) from object.

Provides functions to enhance the available
statistical analysis procedures in R by providing simple functions to
analysis and visualize the 16S rRNA data.Here we present a tutorial
with minimum working examples to demonstrate usage and dependencies.

Kai Guo

microbial

Do 16s Data Analysis and Generate Figures

Pan Gao

phy_tree function

<dl><dt>physeq</dt>
<dd>(Required). An instance of phyloseq-class that contains a phylogenetic tree.
If physeq is a phylogenetic tree (a component data class), then it is returned as-is.</dd>
<dt>...</dt>
<dd>parameters for the phy_tree function in phyloseq package</dd></dl>

Arguments

Retrieve phylogenetic tree (phylo-class) from object. — phy_tree

<dl>

<dt>physeq</dt>
<dd>(Required). An instance of phyloseq-class that contains a phylogenetic tree.
If physeq is a phylogenetic tree (a component data class), then it is returned as-is.</dd>


<dt>...</dt>
<dd>parameters for the phy_tree function in phyloseq package</dd>

</dl>

phy_tree: Retrieve phylogenetic tree (phylo-class) from object.

Description

Usage

Arguments