microbial (version 0.0.21)

plotquality: plot the quality for the fastq file

Description

plot the quality for the fastq file

Usage

plotquality(file, n = 5e+05, aggregate = FALSE)

Value

figure

Arguments

file

(Required). character. File path(s) to fastq or fastq.gz file(s).

n

(Optional). Default 500,000. The number of records to sample from the fastq file.

aggregate

(Optional). Default FALSE. If TRUE, compute an aggregate quality profile for all fastq files provided.

Examples

# \donttest{
plotquality(system.file("extdata", "sam1F.fastq.gz", package="dada2"))
# }