psmelt

Melt phyloseq data object into large data.frame

Provides functions to enhance the available
statistical analysis procedures in R by providing simple functions to
analysis and visualize the 16S rRNA data.Here we present a tutorial
with minimum working examples to demonstrate usage and dependencies.

Kai Guo

microbial

Do 16s Data Analysis and Generate Figures

Pan Gao

psmelt function

<dl><dt>physeq</dt>
<dd>A sample_data-class, or a phyloseq-class object with a sample_data.
If the sample_data slot is missing in physeq, then physeq will be returned as-is,
and a warning will be printed to screen.</dd>
<dt>...</dt>
<dd>parameters for the subset_samples function in phyloseq package</dd></dl>

Arguments

Melt phyloseq data object into large data.frame — psmelt

<dl>

<dt>physeq</dt>
<dd>A sample_data-class, or a phyloseq-class object with a sample_data.
If the sample_data slot is missing in physeq, then physeq will be returned as-is,
and a warning will be printed to screen.</dd>


<dt>...</dt>
<dd>parameters for the subset_samples function in phyloseq package</dd>

</dl>

psmelt: Melt phyloseq data object into large data.frame

Description

Usage

Arguments