MQC_testdata

Data used for demonstrating the functionality of the microbiomeMQC package.

Perform calculations for the WHO International Reference Reagents for the microbiome. Using strain, species or genera abundance tables generated through analysis of 16S ribosomal RNA sequencing or shotgun sequencing which included a reference reagent. This package will calculate measures of sensitivity, False positive relative abundance, diversity, and similarity based on mean average abundances with respect to the reference reagent.

Jacob Dehinsilu

microbiomeMQC

Calculate 4 Key Reporting Measures

Ravneet Bhuller

MQC_testdata function

An object of class <code>data.frame</code> with 26 rows and 6 columns:<dl>
 <dt>Column1</dt>
<dd>species</dd> <dt>Column2</dt>
<dd>DNA_hilo_RR</dd> <dt>Column3</dt>
<dd>perfect result</dd> <dt>Column4</dt>
<dd>high FPRA example</dd> <dt>Column5</dt>
<dd>high diversity example</dd> <dt>Column6</dt>
<dd>low sensitivity example</dd>
</dl>

Format

MQC_testdata — MQC_testdata

An object of class <code>data.frame</code> with 26 rows and 6 columns:<dl>
 <dt>Column1</dt>
<dd>species</dd>

 <dt>Column2</dt>
<dd>DNA_hilo_RR</dd>

 <dt>Column3</dt>
<dd>perfect result</dd>

 <dt>Column4</dt>
<dd>high FPRA example</dd>

 <dt>Column5</dt>
<dd>high diversity example</dd>

 <dt>Column6</dt>
<dd>low sensitivity example</dd>


</dl>

MQC_testdata: MQC_testdata

Description

Usage

Arguments

Format