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microeco (version 1.14.0)

dataset: The dataset structured with microtable class for the demonstration of examples

Description

The dataset arose from 16S rRNA gene amplicon sequencing of wetland soils in China <doi:10.1016/j.geoderma.2018.09.035>. In dataset$sample_table, the 'Group' column means Chinese inland wetlands (IW), coastal wetland (CW) and Tibet plateau wetlands (TW). The column 'Type' denotes the sampling region: northeastern region (NE), northwest region (NW), North China area (NC), middle-lower reaches of the Yangtze River (YML), southern coastal area (SC), upper reaches of the Yangtze River (YU) and Qinghai-Tibet Plateau (QTP). The column 'Saline' represents the saline soils and non-saline soils.

Usage

data(dataset)

Arguments

Format

An R6 class object

Details

  • sample_table: sample information table

  • otu_table: species-community abundance table

  • tax_table: taxonomic table

  • phylo_tree: phylogenetic tree

  • taxa_abund: taxa abundance list with several tables for Phylum...Genus

  • alpha_diversity: alpha diversity table

  • beta_diversity: list with several beta diversity distance matrix