soil_metab

For the explanation of each column of <code>sample_table</code>, please refer to the <code>soil_microb</code> data document.
In <code>tax_table</code>, 'HMDB_ID' is the number of HMDB database. 'KEGG_ID' is the number of KEGG database.<ul>
<li>sample_table: sample information table</li>
<li>otu_table: metabolites abundance table</li>
<li>tax_table: annotation table</li>
</ul>

datasets

A series of data analysis approaches for microbiome data based on the R6 class. The classes are designed for data preprocessing, taxa abundance plotting, alpha diversity analysis, beta diversity analysis, differential abundance test, null model analysis, network analysis, machine learning, environmental data analysis and functional analysis.

Chi Liu

microeco

Microbial Community Ecology Data Analysis

Felipe R. P. Mansoldo

Minjie Yao

Xiangzhen Li

soil_metab function

Format

Microtable object of non-targeted metabolome data from bulk soil and maize rhizosphere soil
in an agricultural field experiment with crop rotation and fertilization treatments (DOI: 10.1007/s11104-024-06847-9). — soil_metab

Microtable object of non-targeted metabolome data from bulk soil and maize rhizosphere soil
in an agricultural field experiment with crop rotation and fertilization treatments (DOI: 10.1007/s11104-024-06847-9).

soil_metab: Microtable object of non-targeted metabolome data from bulk soil and maize rhizosphere soil in an agricultural field experiment with crop rotation and fertilization treatments (DOI: 10.1007/s11104-024-06847-9).

Description

Usage

Arguments

Format