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microseq (version 1.0)

Basic Biological Sequence Analysis

Description

Basic functions for microbial sequence data analysis. In some cases the functions use the corresponding functions in the 'Biostrings' package from Bioconductor , but provide an easier interface.

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Version

Install

install.packages('microseq')

Monthly Downloads

416

Version

1.0

License

GPL-2

Maintainer

Lars Snipen

Last Published

July 27th, 2016

Functions in microseq (1.0)

readFasta and writeFasta

Read and write FASTA files

muscle

Multiple alignment using MUSCLE

readFastq

Read FASTQ files

msaTrim

Trimming multiple sequence alignments

plot.Fasta

Plotting and summary of Fasta objects

cmalign

Multiple alignment using Infernal

Extended gregexpr with substring retrieval

microseq-package

Basic Biological Sequence Analysis

reverseComplement

Reverse-complementation of DNA

translate

Translation according to the standard genetic code