CallaghanCompartment

<p>A class to model restricted diffusion in a cylinder using the
Callaghan's model.</p>

An implementation of a taxonomy of models of restricted diffusion
in biological tissues parametrized by the tissue geometry (axis, diameter,
density, etc.). This is primarily used in the context of diffusion magnetic
resonance (MR) imaging to model the MR signal attenuation in the presence of
diffusion gradients. The goal is to provide tools to simulate the MR signal
attenuation predicted by these models under different experimental
conditions. The package feeds a companion 'shiny' app available at
<https://midi-pastrami.apps.math.cnrs.fr> that serves as a graphical
interface to the models and tools provided by the package. Models currently
available are the ones in Neuman (1974) <doi:10.1063/1.1680931>, Van
Gelderen et al. (1994) <doi:10.1006/jmrb.1994.1038>, Stanisz et al. (1997)
<doi:10.1002/mrm.1910370115>, Soderman & Jonsson (1995)
<doi:10.1006/jmra.1995.0014> and Callaghan (1995)
<doi:10.1006/jmra.1995.1055>.

Aymeric Stamm

midi

Microstructure Information from Diffusion Imaging

CallaghanCompartment function

<p><code>midi::CylinderRadialCompartment</code> -&gt; <code>CallaghanCompartment</code></p>

Super class


<div class="section" id="public-methods">
<h3>Public methods</h3><p></p><p><ul>
<li><p><a href="/link/CallaghanCompartment%24clone()?package=midi&version=0.1.0" data-mini-rdoc="midi::CallaghanCompartment$clone()"><code>CallaghanCompartment$clone()</code></a></p></li>
</ul></p><p></p></div><p><details open><summary>Inherited methods</summary>
<ul>
<li><span class="pkg-link" data-pkg="midi" data-topic="CylinderRadialCompartment" data-id="get_signal"><a href="/link/midi%3A%3ACylinderRadialCompartment%24get_signal()?package=midi&version=0.1.0" data-mini-rdoc="midi::midi::CylinderRadialCompartment$get_signal()"><code>midi::CylinderRadialCompartment$get_signal()</code></a></span></li>
<li><span class="pkg-link" data-pkg="midi" data-topic="CylinderRadialCompartment" data-id="initialize"><a href="/link/midi%3A%3ACylinderRadialCompartment%24initialize()?package=midi&version=0.1.0" data-mini-rdoc="midi::midi::CylinderRadialCompartment$initialize()"><code>midi::CylinderRadialCompartment$initialize()</code></a></span></li>
</ul>
</details></p><p><hr>
<a id="method-CallaghanCompartment-clone"></a></p><div class="section" id="method-clone-">
<h3>Method <code>clone()</code></h3>
<p>The objects of this class are cloneable with this method.</p><div class="section" id="usage">
<h4>Usage</h4>
<p><div class="r"></div></p><pre><code>CallaghanCompartment$clone(deep = FALSE)</code></pre><p></p></div><p></p>
</div><p></p><p><div class="section" id="arguments">
<h4>Arguments</h4>
<p><div class="arguments"></div></p><dl>
<dt><code>deep</code></dt>
<dd><p>Whether to make a deep clone.</p></dd></dl></div></p><p>
</p><p></p>
<p></p><p>
</p>

Methods

Callaghan's model for restricted diffusion in a cylinder — CallaghanCompartment


<div class='section' id='public-methods'>
<h3>Public methods</h3>

<ul>
<li><p><a href='#method-CallaghanCompartment-clone'><code>CallaghanCompartment$clone()</code></a></p></li>
</ul>

</div><p><details open><summary>Inherited methods</summary>
<ul>
<li><span class="pkg-link" data-pkg="midi" data-topic="CylinderRadialCompartment" data-id="get_signal"><a href='../../midi/html/CylinderRadialCompartment.html#method-CylinderRadialCompartment-get_signal'><code>midi::CylinderRadialCompartment$get_signal()</code></a></span></li>
<li><span class="pkg-link" data-pkg="midi" data-topic="CylinderRadialCompartment" data-id="initialize"><a href='../../midi/html/CylinderRadialCompartment.html#method-CylinderRadialCompartment-initialize'><code>midi::CylinderRadialCompartment$initialize()</code></a></span></li>
</ul>
</details>

<hr>
<a id="method-CallaghanCompartment-clone"></a></p><div class='section' id='method-clone-'>
<h3>Method <code>clone()</code></h3>
<p>The objects of this class are cloneable with this method.</p><div class='section' id='usage'>
<h4>Usage</h4>
<p><div class="r"></p><pre><code>CallaghanCompartment$clone(deep = FALSE)</code></pre><p></div></p>
</div>

<div class='section' id='arguments'>
<h4>Arguments</h4>
<p><div class="arguments"></p><dl>
<dt><code>deep</code></dt>
<dd><p>Whether to make a deep clone.</p></dd>


</dl><p></div></p>
</div>

</div>


CallaghanCompartment: Callaghan's model for restricted diffusion in a cylinder

Description

Arguments

Super class

Methods

Public methods

Method `clone()`

Usage

Arguments

References

Description

Arguments

Super class

Methods

Public methods

Method clone()

Usage

Arguments

References

Method `clone()`