miic.write.style.cytoscape

[a string] The file path of the output file (containing the file name without extension).

file

This function writes the miic style for a correct visualization using the cytoscape tool (http://www.cytoscape.org/).

We report an information-theoretic method which learns a large
class of causal or non-causal graphical models from purely observational
data, while including the effects of unobserved latent variables, commonly
found in many datasets. Starting from a complete graph, the method
iteratively removes dispensable edges, by uncovering significant information
contributions from indirect paths, and assesses edge-specific confidences
from randomization of available data. The remaining edges are then oriented
based on the signature of causality in observational data. This approach can
be applied on a wide range of datasets and provide new biological insights
on regulatory networks from single cell expression data, genomic alterations
during tumor development and co-evolving residues in protein structures.
For more information you can refer to:
Cabeli et al. PLoS Comp. Bio. 2020 <doi:10.1371/journal.pcbi.1007866>,
Verny et al. PLoS Comp. Bio. 2017 <doi:10.1371/journal.pcbi.1005662>.

Vincent Cabeli

miic

Learning Causal or Non-Causal Graphical Models Using Information
Theory

Honghao Li

Marcel Ribeiro Dantas

Nadir Sella

Louis Verny

Severine Affeldt

Hervé Isambert

miic.write.style.cytoscape function

<dl><dt>file</dt>
<dd>[a string] The file path of the output file (containing the file name without extension).</dd></dl>

Arguments

Style writing function for the miic network — miic.write.style.cytoscape

<dl>

<dt>file</dt>
<dd>[a string] The file path of the output file (containing the file name without extension).</dd>

</dl>

miic.write.style.cytoscape: Style writing function for the miic network

Description

Usage

Arguments

Details