check_method

Check if the method is supported. If not, throws error.

internal

An interface to build machine learning models for
classification and regression problems. 'mikropml' implements the ML
pipeline described by Topçuoğlu et al. (2020)
<doi:10.1128/mBio.00434-20> with reasonable default options for data
preprocessing, hyperparameter tuning, cross-validation, testing, model
evaluation, and interpretation steps. See the website
<https://www.schlosslab.org/mikropml/> for more information,
documentation, and examples.

Kelly Sovacool

mikropml

User-Friendly R Package for Supervised Machine Learning
Pipelines

Begüm Topçuoğlu

Zena Lapp

Evan Snitkin

Jenna Wiens

Patrick Schloss

Nick Lesniak

Courtney Armour

Sarah Lucas

check_method function

<dl><dt>method</dt>
<dd>ML method.
Options: <code>c("glmnet", "rf", "rpart2", "svmRadial", "xgbTree")</code>.<ul>
<li>glmnet: linear, logistic, or multiclass regression</li>
<li>rf: random forest</li>
<li>rpart2: decision tree</li>
<li>svmRadial: support vector machine</li>
<li>xgbTree: xgboost</li>
</ul></dd>
<dt>hyperparameters</dt>
<dd>Dataframe of hyperparameters
(default <code>NULL</code>; sensible defaults will be chosen automatically).</dd></dl>

Arguments

Kelly Sovacool, <a href="/link/sovacool%40umich.edu?package=mikropml&version=1.6.1" data-mini-rdoc="mikropml::sovacool@umich.edu">sovacool@umich.edu</a>

Author

Check if the method is supported. If not, throws error. — check_method

<dl>

<dt>method</dt>
<dd>ML method.
Options: <code>c("glmnet", "rf", "rpart2", "svmRadial", "xgbTree")</code>.<ul>
<li>glmnet: linear, logistic, or multiclass regression</li>
<li>rf: random forest</li>
<li>rpart2: decision tree</li>
<li>svmRadial: support vector machine</li>
<li>xgbTree: xgboost</li>
</ul></dd>


<dt>hyperparameters</dt>
<dd>Dataframe of hyperparameters
(default <code>NULL</code>; sensible defaults will be chosen automatically).</dd>

</dl>

Kelly Sovacool, <a href='mailto:sovacool@umich.edu'>sovacool@umich.edu</a>

check_method: Check if the method is supported. If not, throws error.

Description

Usage

Arguments

Author

Examples