citrus.combinedFCSSet

A dataset containing the a simple example of cytometry data

datasets

Citrus is a computational technique developed for the analysis
of high dimensional cytometry data sets. This package extracts, statistically
analyzes, and visualizes marker expression from 'citrus' data. This code was used to
generate data for Figures 3 and 4 in the forthcoming manuscript: Throm et al.
<e2><80><9c>Identification of Enhanced Interferon-Gamma Signaling in Polyarticular Juvenile
Idiopathic Arthritis with Mass Cytometry<e2><80><9d>, JCI-Insight. For more information on Citrus,
please see: Bruggner et al. (2014) <doi:10.1073/pnas.1408792111>. To download
the 'citrus' package, please see <https://github.com/nolanlab/citrus>.

Allison Throm

mineCitrus

Extract and Analyze Median Molecule Intensity from 'citrus'
Output

citrus.combinedFCSSet function

A large citrus.combinedFCSSet object with 5 elements:<dl class="dl-horizontal">
 <dt>data</dt><dd>Toy data set for cytometry</dd>
 <dt>fileChannelNames</dt><dd>Names of channels for measured parameters included in toy cytmetry data set</dd>
 <dt>fileIds</dt><dd>ID numbers for each file included in toy cytometry data set</dd>
 <dt>fileNames</dt><dd>Names of files included in toy cytmetry data set</dd>
 <dt>fileReagentNames</dt><dd>Names of measured channels in toy cytmetry data set</dd>
 ...
</dl>

Format

Cytometry data set for example of Citrus data set from nolanlab/citrus — citrus.combinedFCSSet

A large citrus.combinedFCSSet object with 5 elements:<dl class='dl-horizontal'>
 <dt>data</dt><dd>Toy data set for cytometry</dd>
 <dt>fileChannelNames</dt><dd>Names of channels for measured parameters included in toy cytmetry data set</dd>
 <dt>fileIds</dt><dd>ID numbers for each file included in toy cytometry data set</dd>
 <dt>fileNames</dt><dd>Names of files included in toy cytmetry data set</dd>
 <dt>fileReagentNames</dt><dd>Names of measured channels in toy cytmetry data set</dd>
 ...
</dl>

citrus.combinedFCSSet: Cytometry data set for example of Citrus data set from nolanlab/citrus

Description

Usage

Arguments

Format