citrus.foldClustering

A dataset containing the clustering of different cell groups

datasets

Citrus is a computational technique developed for the analysis
of high dimensional cytometry data sets. This package extracts, statistically
analyzes, and visualizes marker expression from 'citrus' data. This code was used to
generate data for Figures 3 and 4 in the forthcoming manuscript: Throm et al.
<e2><80><9c>Identification of Enhanced Interferon-Gamma Signaling in Polyarticular Juvenile
Idiopathic Arthritis with Mass Cytometry<e2><80><9d>, JCI-Insight. For more information on Citrus,
please see: Bruggner et al. (2014) <doi:10.1073/pnas.1408792111>. To download
the 'citrus' package, please see <https://github.com/nolanlab/citrus>.

Allison Throm

mineCitrus

Extract and Analyze Median Molecule Intensity from 'citrus'
Output

citrus.foldClustering function

A large citrus.foldClustering object with 5 elements:<dl class="dl-horizontal">
 <dt>allClustering</dt><dd>A list describing which events belong to which clusters</dd>
 <dt>foldClustering</dt><dd>A list describing which events belong to which clusters for each fold</dd>
 <dt>foldMappingAssignments</dt><dd>A list describing assignments with fold clustering</dd>
 <dt>folds</dt><dd>Descriptions of each data clustering</dd>
 <dt>nFolds</dt><dd>The number of times data is clustered</dd>
 ...
</dl>

Format

Clustering data for example of Citrus data set from nolanlab/citrus — citrus.foldClustering

A large citrus.foldClustering object with 5 elements:<dl class='dl-horizontal'>
 <dt>allClustering</dt><dd>A list describing which events belong to which clusters</dd>
 <dt>foldClustering</dt><dd>A list describing which events belong to which clusters for each fold</dd>
 <dt>foldMappingAssignments</dt><dd>A list describing assignments with fold clustering</dd>
 <dt>folds</dt><dd>Descriptions of each data clustering</dd>
 <dt>nFolds</dt><dd>The number of times data is clustered</dd>
 ...
</dl>

citrus.foldClustering: Clustering data for example of Citrus data set from nolanlab/citrus

Description

Usage

Arguments

Format