mineCitrus (version 1.0.0)

difMarkerPlots2: Plot dot plots of features where one cluster is significantly different from the reference cluster without processing data before hand

Description

Plot dot plots of features where one cluster is significantly different from the reference cluster without processing data before hand

Usage

difMarkerPlots2(data, clusters, markers, diffclust, strat)

Arguments

data

output from call to allmeds function

clusters

clusterIDs of the desired clusters to compare and plot

markers

indices of the columns of the data matrix for features to be analyse

diffclust

clusterID of for cluster to statisticaly compare others to

strat

clusterIDs for stratifying clusters as indicated by Citrus results

Value

Dot plots for all features where one cluster is significantly different from the reference cluster

Examples

# NOT RUN {
library(mineCitrus)
data("citrus.combinedFCSSet")
data("citrus.foldClustering")
data("citrus.foldFeatureSet")
meds<-allmeds(citrus.combinedFCSSet=citrus.combinedFCSSet,
              citrus.foldClustering=citrus.foldClustering,
              citrus.foldFeatureSet=citrus.foldFeatureSet)
graphs<-difMarkerPlots2(data=meds,clusters=c(19999,19972,19988),markers=c(2,3),
                        diffclust=19999,strat=19999)
# }