mineCitrus (version 1.0.0)

plotdif2: Plot dot plots of features where one cluster is significantly different from the reference cluster

Description

Plot dot plots of features where one cluster is significantly different from the reference cluster

Usage

plotdif2(BJHdf, anovadata, strat)

Arguments

BJHdf

results of a call to findsig

anovadata

results of call to processforanova

strat

clusterIDs for clusters that are stratifying

Value

Dot plots for all features where one cluster is significantly different from the reference cluster

Examples

# NOT RUN {
library(mineCitrus)
data("citrus.combinedFCSSet")
data("citrus.foldClustering")
data("citrus.foldFeatureSet")
meds<-allmeds(citrus.combinedFCSSet=citrus.combinedFCSSet,
              citrus.foldClustering=citrus.foldClustering,
              citrus.foldFeatureSet=citrus.foldFeatureSet)
filteredmeds<-findclust(data=meds,clusters=c(19999,19972,19988))
meds2<-filterMarker(clustdat=filteredmeds,markers=c(2,3))
foranova<-processforanova(filtereddata=meds2)
ttests<-posthoc(processedDat=foranova,clustIDdif=19999)
sig<-findSig(posHocRes=ttests)
graphs<-plotdif2(BJHdf=sig,anovadata=foranova,strat=19999)
# }