{"Package":"minfi","Version":"1.18.4","Title":"Analyze Illumina's methylation arrays","Description":"Tools for analyzing and visualizing Illumina's methylation array data.","Authors@R":"c(person(c(\"Kasper\", \"Daniel\"), \"Hansen\", role = c(\"cre\", \"aut\"),\nemail = \"kasperdanielhansen@gmail.com\"),\nperson(\"Martin\", \"Aryee\", role = \"aut\"),\nperson(c(\"Rafael\", \"A.\"), \"Irizarry\", role = \"aut\"),\nperson(c(\"Andrew\", \"E.\"), \"Jaffe\", role = \"ctb\"),\nperson(\"Jovana\", \"Maksimovic\", role = \"ctb\"),\nperson(c(\"E.\", \"Andres\"), \"Houseman\", role = \"ctb\"),\nperson(\"Jean-Philippe\", \"Fortin\", role = \"ctb\"),\nperson(\"Tim\", \"Triche\", role = \"ctb\"),\nperson(c(\"Shan\", \"V.\"), \"Andrews\", role = \"ctb\"))","Depends":"methods,\nBiocGenerics (>= 0.15.3),\nBiobase (>= 2.17.8),\nlattice,\nGenomicRanges,\nSummarizedExperiment (>= 1.1.6),\nBiostrings,\nbumphunter (>= 1.1.9)","Suggests":"IlluminaHumanMethylation450kmanifest (>= 0.2.0),\nIlluminaHumanMethylation450kanno.ilmn12.hg19 (>= 0.2.1),\nminfiData (>= 0.4.1),\nFlowSorted.Blood.450k (>= 1.0.1),\nRUnit,\ndigest,\nBiocStyle,\nknitr,\nrmarkdown","Imports":"S4Vectors,\nGenomeInfoDb,\nIRanges,\nbeanplot,\nRColorBrewer,\nnor1mix,\nsiggenes,\nlimma,\npreprocessCore,\nilluminaio,\nmatrixStats (>= 0.50.0),\nmclust,\ngenefilter,\nnlme,\nreshape,\nMASS,\nquadprog,\ndata.table,\nGEOquery,\nstats,\ngrDevices,\ngraphics,\nutils","Collate":"generics.R\nmset.R\nrset.R\nrgset.R\ngmset.R\ngrset.R\nutils.R\nmanifest.R\nanno.R\nminfiQC.R\ngetSex.R\ndmr.R\nblocks.R\nplot.R\nplotBetasByType.R\npreprocess.R\npreprocessSwan.R\npreprocessQuantile.R\npreprocessNoob.R\npreprocessFunnorm.R\nqc.R\nread.450k.R\nread.meth.R\nread.geo.R\nread.manifest.R\nbumphunter.R\nestimateCellCounts.R\ngaphunter.R\ncompartments.R","VignetteBuilder":"knitr","License":"Artistic-2.0","URL":"https://github.com/kasperdanielhansen/minfi","BugReports":"https://github.com/kasperdanielhansen/minfi/issues","LazyData":"yes","biocViews":"DNAMethylation, Microarray, TwoChannel, DataImport, Preprocessing, QualityControl","readme":"# R package: minfi\nThis is the developer version of Bioconductor package [minfi](http://bioconductor.org/packages/devel/bioc/html/minfi.html). Install in R as:\n\n```r\nsource('http://bioconductor.org/biocLite.R')\nbiocLite('minfi')\n```\n\n## Software status\n\n| Resource: | Bioconductor | Travis CI |\n| ------------- | ------------------- | ------------- |\n| _Platforms:_ | _Multiple_ | _Linux_ |\n| R CMD check | $\"Build$ (release)
$\"Build$ (devel) | $\"Build$ |\n| Test coverage | | $\"Coverage$ | |","repoType":"bioconductor"}

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R package: minfi

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Functions in minfi (1.18.4)