samtools_check

Wrapper for 'Minimap2'. 'Minimap2' is a very valuable long read aligner for the Pacbio and Oxford Nanopore Technologies sequencing platforms. 'minimapR' is an R wrapper for 'minimap2' which was developed by Heng Li <me@liheng.org>.
*SPECIAL NOTES
1. Examples can only be run from 'GitHub' installation.
2. 'conda' or 'mamba' must be used to install 'minimapR' on your system.
3. For Windows users, 'minimap2' and 'samtools' can be installed via MSYS2, instructions are provided when 'minimap2_installation()' is run.
Li, Heng (2018) <doi:10.1093/bioinformatics/bty191> "Minimap2: pairwise alignment for nucleotide sequences".

Jake Reed

minimapR

Wrapper for 'minimap2'

Pradyun Pulipaka

samtools_check function

<dl><dt>return</dt>
<dd>Logical value to return the path of samtools</dd></dl>

Arguments

samtools_check — samtools_check

<dl>

<dt>return</dt>
<dd>Logical value to return the path of samtools</dd>

</dl>

samtools_check: samtools_check

Description

Usage

Value

Arguments

Examples