gdb.init_examples

gdb.init.examples

Extracts the bundled <code>testdb</code> tarball under <code>dir</code> and points the
active groot at <code>&lt;dir&gt;/trackdb/test</code>. Used by examples and tests.

A toolkit for analysis of genomic data. The 'misha' package
implements an efficient data structure for storing genomic data, and
provides a set of functions for data extraction, manipulation and
analysis. Some of the 2D genome algorithms were described in Yaffe and Tanay
(2011) <doi:10.1038/ng.947>.

Aviezer Lifshitz

misha

Toolkit for Analysis of Genomic Data

Misha Hoichman

Eitan Yaffe

Amos Tanay

Weizmann Institute of Science 

gdb.init_examples function

<dl><dt>dir</dt>
<dd>Directory under which to extract the example trackdb. Created if
it does not exist. Defaults to <code>Sys.getenv("MISHA_EXAMPLES_DIR")</code> if
set, otherwise <code><a href="/link/tempdir()?package=misha&version=5.11.23" data-mini-rdoc="misha::tempdir()">tempdir()</a></code>.</dd></dl>

Arguments

Initialise the example Genomic Database — gdb.init_examples

<dl>

<dt>dir</dt>
<dd>Directory under which to extract the example trackdb. Created if
it does not exist. Defaults to <code>Sys.getenv("MISHA_EXAMPLES_DIR")</code> if
set, otherwise <code><a href='https://rdrr.io/r/base/tempfile.html'>tempdir()</a></code>.</dd>

</dl>

gdb.init_examples: Initialise the example Genomic Database

Description

Usage

Value

Arguments

Details

See Also