misha (version 5.11.23)

gdb.install_gtf_converter: Pre-install UCSC's gtfToGenePred binary

Description

Mirrors gdb.install_gff3_converter. Required for the ucsc-hub backend's genes set (UCSC mammal hubs ship GTFs).

Usage

gdb.install_gtf_converter(force = FALSE)

Value

The cache path (invisibly).

Arguments

force

If TRUE, skip consent prompt and re-download even if cached.

Details

Override the binary location by setting environment variable MISHA_GTF_TO_GENEPRED.

Examples

if (FALSE) {
gdb.install_gtf_converter()
Sys.setenv(MISHA_GTF_TO_GENEPRED = "/path/to/your/gtfToGenePred")
}