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mitoODE (version 1.10.0)

Implementation of the differential equation model described in "Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay"

Description

The package contains the methods to fit a cell-cycle model on cell count data and the code to reproduce the results shown in our paper "Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay" by Pau, G., Walter, T., Neumann, B., Heriche, J.-K., Ellenberg, J., & Huber, W., BMC Bioinformatics (2013), 14(1), 308. doi:10.1186/1471-2105-14-308

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Version

Version

1.10.0

License

LGPL

Maintainer

Gregoire Pau

Last Published

February 15th, 2017

Functions in mitoODE (1.10.0)

mitoODE

Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay
figures

Reproduce the results of the mitoODE paper
plotfit

Plot fitted values