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mixAK (version 1.1)
Mixture of methods including mixtures
Description
This package contains a mixture of statistical methods including the MCMC methods to analyze normal mixtures
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Install
install.packages('mixAK')
Monthly Downloads
326
Version
1.1
License
GPL (>= 2)
Maintainer
Arnošt Komárek
Last Published
July 30th, 2010
Functions in mixAK (1.1)
Search all functions
GLMM_MCMCprior.beta
Handle prior.beta argument of GLMM_MCMC function
Galaxy
Velocities of distant galaxies
rSamplePair
Sample a pair (with replacement)
NMixPredDensMarg
Marginal (univariate) predictive density
GLMM_MCMCdata
Data manipulation for the GLMM_MCMC function
NMixPlugDA
Discriminant analysis based on plug-in estimates from the mixture model
plot.NMixPlugDensMarg
Plot computed marginal predictive densities
NMixMCMC
MCMC estimation of (multivariate) normal mixtures with possibly censored data.
NMixPlugDensMarg
Marginal (univariate) densities: plug-in estimate
tracePlots
Traceplots for selected parameters
MatSqrt
Square root of a matrix
Faithful
Old Faithful Geyser Data
Tandmob
Signal Tandmobiel data
MVNmixture
Mixture of (multivariate) normal distributions
Acidity
Acidity index of lakes in North-Central Wisconsin
plot.NMixPredCondDensJoint2
Plot computed predictive pairwise bivariate conditional densities
generatePermutations
Generate all permutations of (1, ..., K)
GLMM_MCMC
MCMC estimation of generalized linear mixed model with mixtures in the distributions.
NMixPseudoGOF
Pseudo goodness-of-fit test for a normal mixture model
rRotationMatrix
Random rotation matrix
plot.NMixPlugDensJoint2
Plot computed marginal pairwise bivariate densities (plug-in estimate)
MVN
Multivariate normal distribution
NMixSummComp
Summary for the mixture components
cbplot
Plot a function together with its confidence/credible bands
TMVN
Truncated multivariate normal distribution
NMixRelabelAlgorithm
Argument manipulation for the NMixRelabel functions
PBCseq
Mayo Clinic Primary Biliary Cirrhosis, sequential data
TandmobEmer
Signal Tandmobiel data - emergence times
NMixRelabel
Re-labeling the MCMC output of the mixture model
Dirichlet
Dirichlet distribution
plot.NMixPlugCondDensJoint2
Plot computed pairwise bivariate conditional densities (plug-in estimate)
GLMM_longitDA
Discriminant analysis for longitudinal profiles based on fitted GLMM's
NMixEM
EM algorithm for a homoscedastic normal mixture
plot.NMixPredCondCDFMarg
Plot computed univariate conditional predictive cumulative distribution functions
NMixMCMCdata
Data manipulation for the NMixMCMC function
BLA
Best linear approximation with respect to the mean square error (theoretical linear regression).
NMixPredDA
Discriminant analysis based on MCMC output from the mixture model
GLMM_MCMCprior.eps
Handle prior.eps argument of GLMM_MCMC function
NMixMCMCwrapper
Wrapper to the NMixMCMC main simulation.
TNorm
Truncated normal distribution
NMixPredCDFMarg
Marginal (univariate) predictive cumulative distribution function
plot.NMixPredCondDensMarg
Plot computed univariate conditional predictive densities
NMixPredCondDensMarg
Univariate conditional predictive density
NMixPredCondDensJoint2
Pairwise bivariate conditional predictive densities
GLMM_MCMCprior.b
Handle prior.eps argument of GLMM_MCMC function
plot.NMixPredCDFMarg
Plot computed marginal predictive cumulative distribution functions
NMixPlugDensJoint2
Pairwise bivariate densities: plug-in estimate
NMixPlugCondDensJoint2
Pairwise bivariate conditional densities: plug-in estimate
MatMPpinv
Moore-Penrose pseudoinverse of a squared matrix
NMixPlugCondDensMarg
Univariate conditional densities: plug-in estimate
Enzyme
Enzymatic activity in the blood
GLMM_MCMCifit
Initial (RE)ML fits for the GLMM_MCMC function
NMixMCMCinity
Initial values of censored observations for the NMixMCMC function
plot.NMixPredDensJoint2
Plot computed marginal pairwise bivariate predictive densities
NMixMCMCinitr
Initial component allocations for the NMixMCMC function
plot.NMixPlugCondDensMarg
Plot computed univariate conditional densities (plug-in estimate)
NMixChainsDerived
Create MCMC chains derived from previously sampled values
NMixPredDensJoint2
Pairwise bivariate predictive density
NMixPredCondCDFMarg
Univariate conditional predictive cumulative distribution function
autolayout
Automatic layout for several plots in one figure
GLMM_MCMCscale.b
Handle scale.b argument of GLMM_MCMC function
SP2Rect
Creation of a rectangular symmetric matrix from its lower triangle (symmetric packed format)
Y2T
Transform fitted distribution of Y=trans(T) into distribution of T
Wishart
Wishart distribution
plot.NMixPredDensMarg
Plot computed marginal predictive densities