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mixAK (version 1.3)
Mixture of methods including mixtures
Description
This package contains a mixture of statistical methods including the MCMC methods to analyze normal mixtures
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Install
install.packages('mixAK')
Monthly Downloads
925
Version
1.3
License
GPL (>= 2)
Maintainer
Arnošt Komárek
Last Published
February 20th, 2011
Functions in mixAK (1.3)
Search functions
Acidity
Acidity index of lakes in North-Central Wisconsin
GLMM_MCMCprior.b
Handle prior.eps argument of GLMM_MCMC function
NMixMCMCinitr
Initial component allocations for the NMixMCMC function
NMixEM
EM algorithm for a homoscedastic normal mixture
MVNmixture
Mixture of (multivariate) normal distributions
NMixPredCondDensJoint2
Pairwise bivariate conditional predictive densities
NMixMCMCdata
Data manipulation for the NMixMCMC function
NMixPlugDensMarg
Marginal (univariate) densities: plug-in estimate
Wishart
Wishart distribution
NMixPlugDA
Discriminant analysis based on plug-in estimates from the mixture model
plot.NMixPlugCondDensJoint2
Plot computed pairwise bivariate conditional densities (plug-in estimate)
Dirichlet
Dirichlet distribution
TandmobEmer
Signal Tandmobiel data - emergence times
plot.NMixPredDensMarg
Plot computed marginal predictive densities
cbplot
Plot a function together with its confidence/credible bands
GLMM_MCMC
MCMC estimation of generalized linear mixed model with mixtures in the distributions.
TNorm
Truncated normal distribution
fitted.GLMM_MCMC
Fitted profiles in the GLMM model
plot.NMixPredDensJoint2
Plot computed marginal pairwise bivariate predictive densities
Y2T
Transform fitted distribution of Y=trans(T) into distribution of T
plot.NMixPredCondCDFMarg
Plot computed univariate conditional predictive cumulative distribution functions
PBCseq
Mayo Clinic Primary Biliary Cirrhosis, sequential data
rRotationMatrix
Random rotation matrix
NMixRelabel
Re-labeling the MCMC output of the mixture model
SP2Rect
Creation of a rectangular symmetric matrix from its lower triangle (symmetric packed format)
plot.NMixPlugCondDensMarg
Plot computed univariate conditional densities (plug-in estimate)
NMixRelabelAlgorithm
Argument manipulation for the NMixRelabel functions
NMixPlugCondDensJoint2
Pairwise bivariate conditional densities: plug-in estimate
generatePermutations
Generate all permutations of (1, ..., K)
Tandmob
Signal Tandmobiel data
plot.NMixPredCondDensMarg
Plot computed univariate conditional predictive densities
Enzyme
Enzymatic activity in the blood
Galaxy
Velocities of distant galaxies
GLMM_MCMCscale.b
Handle scale.b argument of GLMM_MCMC function
NMixPredDensJoint2
Pairwise bivariate predictive density
GLMM_longitDA
Discriminant analysis for longitudinal profiles based on fitted GLMM's
NMixPredCDFMarg
Marginal (univariate) predictive cumulative distribution function
getProfiles
Individual longitudinal profiles of a given variable
MVN
Multivariate normal distribution
NMixPredDensMarg
Marginal (univariate) predictive density
rSamplePair
Sample a pair (with replacement)
NMixPseudoGOF
Pseudo goodness-of-fit test for a normal mixture model
plotProfiles
Plot individual longitudinal profiles
plot.NMixPlugDensJoint2
Plot computed marginal pairwise bivariate densities (plug-in estimate)
GLMM_MCMCifit
Initial (RE)ML fits for the GLMM_MCMC function
NMixPredCondDensMarg
Univariate conditional predictive density
GLMM_MCMCdata
Data manipulation for the GLMM_MCMC function
NMixMCMCinity
Initial values of censored observations for the NMixMCMC function
NMixChainsDerived
Create MCMC chains derived from previously sampled values
Faithful
Old Faithful Geyser Data
summaryDiff
Posterior summary statistics for a difference of two quantities
NMixPlugDensJoint2
Pairwise bivariate densities: plug-in estimate
MatMPpinv
Moore-Penrose pseudoinverse of a squared matrix
BsBasis
B-spline basis
tracePlots
Traceplots for selected parameters
BLA
Best linear approximation with respect to the mean square error (theoretical linear regression).
GLMM_MCMCprior.eps
Handle prior.eps argument of GLMM_MCMC function
NMixPlugCondDensMarg
Univariate conditional densities: plug-in estimate
NMixSummComp
Summary for the mixture components
MatSqrt
Square root of a matrix
GLMM_MCMCprior.alpha
Handle prior.alpha argument of GLMM_MCMC function
NMixMCMCwrapper
Wrapper to the NMixMCMC main simulation.
NMixPredCondCDFMarg
Univariate conditional predictive cumulative distribution function
NMixPredDA
Discriminant analysis based on MCMC output from the mixture model
plot.NMixPredCDFMarg
Plot computed marginal predictive cumulative distribution functions
NMixMCMC
MCMC estimation of (multivariate) normal mixtures with possibly censored data.
TMVN
Truncated multivariate normal distribution
plot.NMixPlugDensMarg
Plot computed marginal predictive densities
autolayout
Automatic layout for several plots in one figure
plot.NMixPredCondDensJoint2
Plot computed predictive pairwise bivariate conditional densities