mixIndependR (version 0.3.0)

AlleleFreq: Calculate Allele Frequency

Description

Calculate Allele Frequency

Usage

AlleleFreq(x)

Arguments

x

a dataset of alleles. Type needs to be Homogeneous. Each row denotes each sample. One allele in one cell.In the (2r-1)th column, there is the other allele on the same locus from that in the 2r-th column; noted: no column for ID, make row.names=1 when importing.

Value

a matrix of allele frequencies. Each row denotes each allele; each column denotes each marker. The order of makers follows x.

Details

This function calculates the allele frequencies of one dataset.

Examples

# NOT RUN {
x <- data.frame(STR1=c(12,13,13,14,15,13,14,12,14,15),
               STR1_1=c(12,14,13,15,13,14,13,12,14,15),
               SNP1=c("A","T","A","A","T","A","A","T","T","A"),
               SNP1_1=c("A","T","T","T","A","T","A","A","T","T"))
AlleleFreq(x)

# }