mixIndependR (version 0.3.0)

mixIndependK: Quick pvalue of total number of heterozygous loci

Description

Quick pvalue of total number of heterozygous loci

Usage

mixIndependK(x,t,B)

Arguments

x

a dataset of alleles. Each row denotes each individual.One allele in one cell.In the (2r-1)th column, there is the same locus with the 2r-th column; noted: no column for ID, make row.names=1 when importing.

t

times of simulation in "Simulate_DistK" and "Simulate_DistX".

B

times of bootstrapping in Chi Squares Test.

Value

pvalue (1-cumulative probabilities) for the number of heterozygous loci(K)

Details

This function is a summary of pipeline for number of heterozygous loci (K), and generates the p-value of K for the target dataset.

Examples

# NOT RUN {
x0 <- data.frame(STR1=c(12,13,13,14,15,13,14,12,14,15),
                STR1_1=c(12,14,13,15,13,14,13,12,14,15),
                SNP1=c("A","T","A","A","T","A","A","T","T","A"),
                SNP1_1=c("A","T","T","T","A","T","A","A","T","T"),
                STR2=c(10,12,11,9,10,12,11,12,12,10),
                STR2_1=c(10,9,11,11,10,12,10,10,12,9),
                SNP2=c("C","C","G","G","G","G","C","G","G","C"),
                SNP2_1=c("C","C","G","G","C","G","C","C","G","G"))
mixIndependK(x0,10,10)
# }