mixIndependR (version 1.0.0)

ExpProAlleleShare: Calculate the Expected Probability of 0,1 and 2 Shared Alleles###

Description

Calculate the Expected Probability of 0,1 and 2 Shared Alleles###

Usage

ExpProAlleleShare(p)

Arguments

p

a matrix/double of frequency of alleles; Outcome of "AlleleFreq". Each column denotes each locus. Different alleles is ordered in different rows such as 11,11.3,12,12.2,13... and so on

Value

a matrix/double of expected probabilities of 0,1 and 2 shared alleles for each locus. Each row denotes each locus. The first column denotes the probability of 0 shared alleles, the second denotes 1 shared allele, the third denotes 2 shared alleles.

Details

This function Calculates the Expected Probability of 0,1 and 2 Shared Alleles for a set of loci. Usually followed by write.csv(as.data.frame(y),file = "~/*.csv") to export the result of a n x3 matrix.

References

Weir, B. S. (2004, ISSN:0022-1198)

Examples

# NOT RUN {
a0<-matrix(runif(20),nrow=5)
a1<-colSums(a0)
a<-data.frame(STR1=a0[,1]/a1[1],STR2=a0[,2]/a1[2],STR3=a0[,3]/a1[3],STR4=a0[,4]/a1[4])
ExpProAlleleShare(a)

# }