mixtools (version 1.0.4)

logisregmixEM: EM Algorithm for Mixtures of Logistic Regressions

Description

Returns EM algorithm output for mixtures of logistic regressions with arbitrarily many components.

Usage

logisregmixEM(y, x, N = NULL, lambda = NULL, beta = NULL, k = 2, addintercept = TRUE, epsilon = 1e-08,  maxit = 10000, verb = FALSE)

Arguments

y

An n-vector of successes out of N trials.

x

An nxp matrix of predictors. See addintercept below.

N

An n-vector of number of trials for the logistic regression. If NULL, then N is an n-vector of 1s for binary logistic regression.

lambda

Initial value of mixing proportions. Entries should sum to 1. This determines number of components. If NULL, then lambda is random from uniform Dirichlet and number of components is determined by beta.

beta

Initial value of beta parameters. Should be a pxk matrix, where p is the number of columns of x and k is number of components. If NULL, then beta is generated by binning the data into k bins and using glm on the values in each of the bins. If both lambda and beta are NULL, then number of components is determined by k.

k

Number of components. Ignored unless lambda and beta are both NULL.

addintercept

If TRUE, a column of ones is appended to the x matrix before the value of p is calculated.

epsilon

The convergence criterion.

maxit

The maximum number of iterations.

verb

If TRUE, then various updates are printed during each iteration of the algorithm.

Value

logisregmixEM returns a list of class mixEM with items:

x

The predictor values.

y

The response values.

lambda

The final mixing proportions.

beta

The final logistic regression coefficients.

loglik

The final log-likelihood.

posterior

An nxk matrix of posterior probabilities for observations.

all.loglik

A vector of each iteration's log-likelihood.

restarts

The number of times the algorithm restarted due to unacceptable choice of initial values.

ft

A character vector giving the name of the function.

References

McLachlan, G. J. and Peel, D. (2000) Finite Mixture Models, John Wiley \& Sons, Inc.

See Also

poisregmixEM

Examples

## EM output for data generated from a 2-component logistic regression model.

set.seed(100)
beta <- matrix(c(1, .5, 2, -.8), 2, 2)
x <- runif(50, 0, 10)
x1 <- cbind(1, x)
xbeta <- x1%*%beta
N <- ceiling(runif(50, 50, 75))
w <- rbinom(50, 1, .3)
y <- w*rbinom(50, size = N, prob = (1/(1+exp(-xbeta[, 1]))))+
              (1-w)*rbinom(50, size = N, prob = 
              (1/(1+exp(-xbeta[, 2]))))
out.1 <- logisregmixEM(y, x, N, verb = TRUE, epsilon = 1e-01)
out.1

## EM output for data generated from a 2-component binary logistic regression model.

beta <- matrix(c(-10, .1, 20, -.1), 2, 2)
x <- runif(500, 50, 250)
x1 <- cbind(1, x)
xbeta <- x1%*%beta
w <- rbinom(500, 1, .3)
y <- w*rbinom(500, size = 1, prob = (1/(1+exp(-xbeta[, 1]))))+
              (1-w)*rbinom(500, size = 1, prob = 
              (1/(1+exp(-xbeta[, 2]))))
out.2 <- logisregmixEM(y, x, beta = beta, lambda = c(.3, .7), 
                       verb = TRUE, epsilon = 1e-01)
out.2