abouheif

The Abouheif distance is the product of the number of direct descendants of each node in the path between two nodes.
It is a measure of the number of transmission events between two nodes.

Statistical framework for comparing sets of trees using hypothesis testing methods. Designed for transmission trees, phylogenetic trees, and directed acyclic graphs (DAGs), the package implements chi-squared tests to compare edge frequencies between sets and PERMANOVA to analyse topological dissimilarities with customisable distance metrics, following Anderson (2001) <doi:10.1111/j.1442-9993.2001.01070.pp.x>.

Cyril Geismar

mixtree

A Statistical Framework for Comparing Sets of Trees

abouheif function

<dl><dt>tree</dt>
<dd>A data frame representing a transmission tree, with the first column containing the infector IDs and the second the infectee IDs.</dd></dl>

Arguments

Compute the Abouheif distance matrix — abouheif

<dl>

<dt>tree</dt>
<dd>A data frame representing a transmission tree, with the first column containing the infector IDs and the second the infectee IDs.</dd>

</dl>

abouheif: Compute the Abouheif distance matrix

Description

Usage

Value

Arguments

Examples